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JJ, Leslie DM, et al. A data integration methodology for systems biology. Proc Natl Acad Sci U S A 102: 1729617301. 24. Kalyana-Sundaram S, Kumar-Sinha C, Shankar S, Robinson DR, Wu YM, et al. Expressed pseudogenes in the transcriptional landscape of human cancers. Cell 149: 16221634. 25. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. Database sources in the National Center for Biotechnology Info. Nucleic Acids Res 39: D3851. 26. UniProt_Consortium The Universal Protein Resource in 2010. Nucleic Acids Res 38: D142148. 27. Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, et al. Manual GO annotation of predictive protein signatures: the InterPro method to GO curation. Database 2012: bar068. 28. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. Database sources from the National Center for Biotechnology Info. Nucleic Acids Res 40: D1325. 29. Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308311. 30. International HapMap Consortium. Integrating common and uncommon genetic variation in diverse human populations. Nature 467: 5258. 31. Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW Development of bioinformatics sources for display and analysis of copy quantity as well as other structural variants inside the human genome. Cytogenet Genome Res, 115, 205 214. 32. Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, et 1315463 al. Human Protein Reference Database2009 update. Nucleic Acids Res, 37, D767772. 33. Jones AR, Overly CC, Sunkin SM The Allen Brain Atlas: 5 years and beyond. Nat Rev Neurosci ten: 821828. 34. Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470 476. 35. Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, et al. Dynamic transcriptomes throughout neural differentiation of human embryonic stem cells revealed by short, lengthy, and paired-end sequencing. Proc Natl Acad Sci U S A 107: 52545259. 36. Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, et al. The UCSC Genome Browser database: 2014 update. Nucleic Acids Res 42: D764 770. 37. Relling MV, Gardner EE, Sandborn WJ, Schmiegelow K, Pui CH, et al. Clinical Pharmacogenetics Implementation Consortium recommendations for thiopurine methyltransferase genotype and thiopurine dosing. Clin Pharmacol Ther 89: 387391. 38. Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, et al. The Licochalcone-A chemical information Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res 39: D10671072. 39. Knox C, Law V, Jewison T, Liu P, Ly S, et al. DrugBank three.0: a comprehensive resource for `omics’ investigation on drugs. Nucleic Acids Res 39: D10351041. 40. Xie C, Mao X, Huang J, Ding Y, Wu J, et al. KOBAS two.0: a net server for annotation and identification of enriched pathways and diseases. Nucleic Acids Res, 39, W316322. 41. Zhao M, Qu H PathLocdb: a comprehensive database for the subcellular Tubastatin A localization of metabolic pathways and its application to several localization evaluation. BMC Genomics 11 Suppl four: S13. 42. Zhao M, Chen X, Gao G, Tao L, Wei L RLEdb: a database of ratelimiting enzymes and their regulation in human, rat, mouse, yeast and E. coli. Cell Res 19: 793795. 43. Kong L, Cheng L, Fan LY, Zhao M, Qu H IQdb: an intelligence quotient score-associated gene resource for human intelligence. Database 2013: bat063. 44. Wang K, Li M, Hakonarson H ANNOVAR: functional annotation of genetic variants from high-throughp.JJ, Leslie DM, et al. A information integration methodology for systems biology. Proc Natl Acad Sci U S A 102: 1729617301. 24. Kalyana-Sundaram S, Kumar-Sinha C, Shankar S, Robinson DR, Wu YM, et al. Expressed pseudogenes within the transcriptional landscape of human cancers. Cell 149: 16221634. 25. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. Database resources on the National Center for Biotechnology Information. Nucleic Acids Res 39: D3851. 26. UniProt_Consortium The Universal Protein Resource in 2010. Nucleic Acids Res 38: D142148. 27. Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, et al. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Database 2012: bar068. 28. Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. Database sources from the National Center for Biotechnology Data. Nucleic Acids Res 40: D1325. 29. Sherry ST, Ward MH, Kholodov M, Baker J, Phan L, et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308311. 30. International HapMap Consortium. Integrating typical and rare genetic variation in diverse human populations. Nature 467: 5258. 31. Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW Improvement of bioinformatics resources for show and analysis of copy quantity and also other structural variants in the human genome. Cytogenet Genome Res, 115, 205 214. 32. Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, et 1315463 al. Human Protein Reference Database2009 update. Nucleic Acids Res, 37, D767772. 33. Jones AR, Overly CC, Sunkin SM The Allen Brain Atlas: five years and beyond. Nat Rev Neurosci 10: 821828. 34. Wang ET, Sandberg R, Luo S, Khrebtukova I, Zhang L, et al. Option isoform regulation in human tissue transcriptomes. Nature 456: 470 476. 35. Wu JQ, Habegger L, Noisa P, Szekely A, Qiu C, et al. Dynamic transcriptomes through neural differentiation of human embryonic stem cells revealed by short, lengthy, and paired-end sequencing. Proc Natl Acad Sci U S A 107: 52545259. 36. Karolchik D, Barber GP, Casper J, Clawson H, Cline MS, et al. The UCSC Genome Browser database: 2014 update. Nucleic Acids Res 42: D764 770. 37. Relling MV, Gardner EE, Sandborn WJ, Schmiegelow K, Pui CH, et al. Clinical Pharmacogenetics Implementation Consortium suggestions for thiopurine methyltransferase genotype and thiopurine dosing. Clin Pharmacol Ther 89: 387391. 38. Davis AP, King BL, Mockus S, Murphy CG, Saraceni-Richards C, et al. The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res 39: D10671072. 39. Knox C, Law V, Jewison T, Liu P, Ly S, et al. DrugBank 3.0: a extensive resource for `omics’ research on drugs. Nucleic Acids Res 39: D10351041. 40. Xie C, Mao X, Huang J, Ding Y, Wu J, et al. KOBAS two.0: a internet server for annotation and identification of enriched pathways and ailments. Nucleic Acids Res, 39, W316322. 41. Zhao M, Qu H PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to a number of localization analysis. BMC Genomics 11 Suppl 4: S13. 42. Zhao M, Chen X, Gao G, Tao L, Wei L RLEdb: a database of ratelimiting enzymes and their regulation in human, rat, mouse, yeast and E. coli. Cell Res 19: 793795. 43. Kong L, Cheng L, Fan LY, Zhao M, Qu H IQdb: an intelligence quotient score-associated gene resource for human intelligence. Database 2013: bat063. 44. Wang K, Li M, Hakonarson H ANNOVAR: functional annotation of genetic variants from high-throughp.

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